He was stripped of the captaincy for Thursday's Europa League match against Galatasaray.
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Henderson spoke with technical director Alex Kroes and general manager Menno Geelen after the 2-1 win.
The 34-year-old had threatened to go on strike if not allowed to move to Monaco.
Coach Francesco Faroili handed the armband to keeper Remco Pasveer just before kick-off.
Henderson was substituted after 75 minutes due to cramp.
Per Dutch sources, he is now set to stay and will play with the team for the rest of the term.